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    • Amulya Nedunuri Bioinformatics Data Analyst 0 reviews
    • Data Mining
    • mySQL
    • Ontologies
    • Python
    • R


    A technically sound and detail-oriented Bioinformatics Engineer with professional working experience at Illumina.



          Solid hands-on experience in code development with error-free software

          Skilled in scripting languages, variety of operating environments, databases and tools.


    MS in Bioinformatics

    Biological background:

    MS in Bioinformatics from San Jose State University, BTECH in Biotechnology

    Programming skills:

    Python, MySQL, SQL server, R

    Past & ongoing projects:

    Software Developer in Test, Bioinformatics, Illumina, Santa Clara, USA (September 2014-October 2016)
    ● Worked for various clients like:
    ○ Bristol-Myers Squibb:
    - Delivered an automated tool to analyse clinical data of individual patient and monitor patient treatment over time using Python
    - it has increased the accuracy of and reduced the time taken for each release
    ○ Genomics England:
    - Performed extensive backend analysis using MySQL to retrieve the data from the database and calculated mutation frequency of each gene marker using R
    ○ Oxford:
    - automated the cohort-level tests (web application) by filtering patients based on clinical and molecular parameters using Selenium WebDriver
    ○ American Society of Clinical Oncology:
    - Worked using Test Driven Development (TDD) approach

    ● delivered an automated validation tool using Python for cohort analysis of highly curated public and proprietary datasets across a broad range of disease indications with 120,000+ samples to reduce manual effort. The tool takes user inputs with intuitive queries for the analysis of patient cohorts based on project, study, patient or sample criteria
    ● this has helped in reducing the analysis time from 2 days to utmost 3 hours depending on the size of the dataset
    ● developed a Python script to use Crossmap and liftover data from genome build GRCh37 to GrCh38 and vice versa
    ● tested Illumina Hadean’s APIs using Java's Rest-Assured framework

    Curation Intern, Illumina, Santa Clara, USA (June 2014 – September 2014)
    ● Automation of somatic variant curation from publicly available databases
    ● manually curate variants from public data sources such as The Cancer Genome Atlas (TCGA), International Cancer Genome Consortium (ICGC), Cancer Cell Line Encyclopedia (CCLE), Gene Expression Omnibus (GEO) and the database of Genotypes and Phenotypes (dbGaP)

    Research Assistant, Stanford School of Medicine, Palo Alto, USA (January 2014 - December 2014)
    ● Developed a tool to curate the gene expression datasets in an automated fashion from GEO database
    ● utilized Python to download data from GEO, study and filter down the ontologies to be used for curating the phenotypic data into a standardized form with the least manual effort and with >87% accuracy
    ● providing direct assistance to research professor in automating and analyzing the drug databases

    Graduate Research Assistant, San Jose State University, San Jose, USA (June 2013 – June 2014)
    ● Guiding undergraduate research assistants with their work
    ● providing direct assistance to research professor in the field of Bioinformatics and Computational Chemistry

    Work History (0)

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    • Hourly Rate: 15.00
    • Rating:
    • Experience: 3 years
    • Projects worked: 0
    • Total earned: 0.00
    • Country: United Kingdom