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    ABOUT INO DE BRUIJN

    • Ino de Bruijn Bioinformatics Engineer 0 reviews
    • Java
    • Javascript
    • Machine Learning
    • Python
    • Web Development

    Overview

    Bioinformatics Engineer in Jorge Reis-Filho lab (https://www.mskcc.org/research-areas/labs/jorge-reis-filho). Developing new methods for the analysis of NGS sequencing data to identify drivers of special histological types of breast cancer. Maintaining and extending the lab’s pipeline that leverages bioinformatics tools to do mutation calling and copy number, ploidy, purity and clonality estimations. Python, bash, R.

    Full stack developer for the open source cBioPortal for Cancer Genomics (https://github.com/cBioPortal/cbioportal). The pipeline provides visualization, analysis, and downloads of large-scale cancer genomics data sets. JavaScript, Java, MySQL.

    Also, several years of experience in analyzing metagenomics NGS data in Sweden.

    Homepage: http://ino.pm

    Github: https://github.com/inodb

    Twitter: https://twitter.com/inodb

    LinkedIn: https://www.linkedin.com/in/inodb

    Education:

    MSc Bioinformatics, BSc Computer Science

    Biological background:

    Metagenomics, Cancer Genomics

    Programming skills:

    Data Analysis & Engineering in Python, Bash, JavaScript, Java

    Past & ongoing projects:

    - Full Stack Developer cBioPortal (http://cbioportal.org/)
    - Finding revertant mutations in breast cancer patients (https://github.com/inodb/revmut)
    - Mutation Confirmation in cfDNA (https://github.com/inodb/sufam)
    - Virus detection in time series NGS data (https://github.com/inodb/2014-05-mdopson-viral)
    - Metagenomics Clustering Algorithm Development
    (https://github.com/BinPro/CONCOCT)
    - Metagenomics Workshops
    (http://metagenomics-workshop.readthedocs.io/en/latest/)

    Work History (0)

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    INFO

    • Hourly Rate: 70.00
    • Rating:
    • Experience: 5 years
    • Projects worked: 0
    • Total earned: 0.00
    • Country: United States